neuroflow0.2.31 · open source

A complete research system
for neuroscience teams.

Nineteen phases from the first question to the published paper, and on to the next. Memory, tasks and deadlines for you, the project and the team — plain files, inside Claude Code.

01 / 08 — QUESTION
It starts with a question. The literature is searched and read with you; hypotheses and the analysis plan are frozen before any data exist.
02 / 08 — FUNDING
The grant and the budget are written from the same record as the plan, so all three say the same thing.
03 / 08 — INSTRUMENTS
Paradigms are audited for timing before anyone sits down. Analysis tools are built for their job and checked against known answers.
04 / 08 — DATA
Recordings land in BIDS and raw stays raw. Every preprocessing step is on record; confirmatory tests run on the frozen plan.
05 / 08 — MODELS
Computational models pass a smoke test before the first long run. Parameter searches and cluster jobs are registered and tracked.
06 / 08 — WRITING
Paper, reviews, poster and reports are written against the project's own record, then read sentence by sentence.
07 / 08 — SHARING
Exports and archives leave with local files held back. Notes taken along the way become the next question.
08 / 08 — MEMORY · YOU
Your profile and writing style, your ideas, a board for your own tasks and a personal wiki — in a private repository that follows you from project to project.
08 / 08 — MEMORY · PROJECT
Each project keeps one memory in its own git: objectives, deadlines, a task board, meetings that turn into tasks, and every decision with its reason.
08 / 08 — MEMORY · TEAM
A hive connects the lab's projects: members, research directions, a team board and a shared wiki. Nothing personal leaves without a yes.
THE NEXT STUDY
The end of one study is the start of the next — and it begins with everything you, the project and the team have learned.
QUESTION
FUNDING
INSTRUMENTS
DATA
MODELS
WRITING
SHARING
MEMORY
/plugin install neuroflow --marketplace stanislavjiricek/neuroflow Watch the intro Documentation Source
PHASE 01 / 19NEXT STUDY · 01 / 19
ideation
A question, its literature and the gap — searched, downloaded, summarised.
/neuroflow:ideation
PHASE 02 / 19
preregistration
Hypotheses and analyses written down, then frozen by a person's key press.
/neuroflow:preregistration
PHASE 03 / 19
grant-proposal
Aims and methods that say the same thing as the plan.
/neuroflow:grant-proposal
PHASE 04 / 19
finance
The budget, line by line.
/neuroflow:finance
PHASE 05 / 19
experiment
Paradigms written and audited for timing before anyone sits down.
/neuroflow:experiment
PHASE 06 / 19
tool-build
Analysis tools built against what they must do.
/neuroflow:tool-build
PHASE 07 / 19
tool-validate
Tools checked against answers known in advance.
/neuroflow:tool-validate
PHASE 08 / 19
data
Recordings in BIDS. Raw data stays as it was recorded.
/neuroflow:data
PHASE 09 / 19
data-preprocess
Pipelines with every parameter on record.
/neuroflow:data-preprocess
PHASE 10 / 19
data-analyze
Confirmatory tests on the frozen plan; exploration in its own ledger.
/neuroflow:data-analyze
PHASE 11 / 19
brain-build
Models with a smoke test before the first long run.
/neuroflow:brain-build
PHASE 12 / 19
brain-optimize
Parameter searches behind a smoke gate.
/neuroflow:brain-optimize
PHASE 13 / 19
brain-run
Long runs and cluster jobs, registered and tracked.
/neuroflow:brain-run
PHASE 14 / 19
paper
Written against its own record, then read sentence by sentence.
/neuroflow:paper
PHASE 15 / 19
review
Peer review under the journal's rules, hidden text surfaced.
/neuroflow:review
PHASE 16 / 19
poster
A poster checked at print size.
/neuroflow:poster
PHASE 17 / 19
write-report
Progress reports from what actually happened.
/neuroflow:write-report
PHASE 18 / 19
output
Exports and archives, with local files held back.
/neuroflow:output
PHASE 19 / 19
notes
Notes and ideas captured any time — the seeds of the next question.
/neuroflow:notes
MEMORY · 1 / 3
you
Private, and with you in every project.
/neuroflow:flowie
MEMORY · 2 / 3
the project
Tasks, deadlines and decisions, shared with everyone on it.
/neuroflow:dashboard
MEMORY · 3 / 3
the team
One hive for the whole lab, across its projects.
/neuroflow:hive
SCROLL TO TURN THE CYCLE STUDY 01
The intro · 4:33 · with captions